[Sax-project-users] Problems Compiling SaX

[Giovanni Bussi]

On my laptop I have bash 4.0 (same as you) which has a bug. You can
verify the bug typing
"bash bug.bash" (using the file attached). If you receive an error,
you have a buggy bash

In case you have a buggy bash, I suggest you to install either bash 3
or bash 4.1 (I just tried, and it seems they solved the problem at
some stage).

Just get it from here http://ftp.gnu.org/gnu/bash/, download and apply
the patches from here http://ftp.gnu.org/gnu/bash/bash-4.1-patches/,
and compile it with "configure ; make" as usual. Then you can verify
that the bug disappeard with "/path-to-bash/bash-4.1/bash bug.bash".
You should not receive any error now.

Now, before recompiling SaX, add to your environment the location of
the correct bash, something like:
export BASH_LOCATION=/path-to-bash/bash-4.1/bash
followed by "make allmake"

Let me know if you succeded...

Giovanni



On Wed, Mar 24, 2010 at 9:20 AM, Shuangping Liu <liusp0301 at gmail.com> wrote:
> Dear Giovanni Bussi,
>
> Thanks for your reply. I use Kubuntu 9.10, and here is my bash information:
>
> GNU bash, version 4.0.33(1)-release (x86_64-pc-linux-gnu)
> Copyright (C) 2009 Free Software Foundation, Inc.
> License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html
>>
>
> This is free software; you are free to change and redistribute it.
> There is NO WARRANTY, to the extent permitted by law.
>
> On Wed, Mar 24, 2010 at 4:16 PM, Giovanni Bussi <bussi at sissa.it> wrote:
>
>> Dear Shuangping,
>>
>> I think that you have a buggy version of bash.
>>
>> Can you please tell me the output of the command "bash --version" on
>> your system?
>>
>> Giovanni
>>
>> On Wed, Mar 24, 2010 at 8:47 AM, Shuangping Liu <liusp0301 at gmail.com>
>> wrote:
>> > Dear developers,
>> >
>> > I have some problems when compiling SaX: (Compiling environment: Intel
>> C++
>> > and Fortran Compiler, Intel MKL library)
>> >
>> > 1. When type in "make allmake", I always receive
>> > information: ../../IDE/bin/sprep: line 59: unexpected EOF while looking
>> for
>> > matching `)', ../../IDE/bin/sprep: line 639: syntax error: unexpected end
>> of
>> > file. Here is the information I get from this command:
>> >
>> > IDE/IDE_makemake.sh
>> > make -f Makefile allmake_
>> > make[1]: Entering directory `/home/liuhr/QE/sax-1.0.1'
>> > IDE/makemake.sh blas
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh fftw
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh iotk
>> > ../../IDE/bin/sprep: line 59: unexpected EOF while looking for matching
>> `)'
>> > ../../IDE/bin/sprep: line 639: syntax error: unexpected end of file
>> > ../../IDE/bin/sprep: line 59: unexpected EOF while looking for matching
>> `)'
>> > ../../IDE/bin/sprep: line 639: syntax error: unexpected end of file
>> > /home/liuhr/QE/sax-1.0.1
>> > example1.o : @iotk_module@
>> > example2.o : @iotk_module@
>> > example3.o : @iotk_module@
>> > example4.o : @iotk_module@
>> > iotk_copy.o : @iotk_files_interf@
>> > iotk_copy.o : @iotk_module@
>> > test.o : @iotk_module@
>> > test2.o : @iotk_module@
>> > test3.o : @iotk_module@
>> > test4.o : @iotk_base@
>> > test4.o : @iotk_error_interf@
>> > test5.o : @iotk_module@
>> > test5.o : @iotk_xtox_interf@
>> > test6.o : @iotk_module@
>> > test7.o : @iotk_misc_interf@
>> > test7.o : @iotk_module@
>> > test7.o : @iotk_str_interf@
>> > test8.o : @iotk_module@
>> > test8.o : @iotk_stream_interf@
>> > test9.o : @iotk_module@
>> > test9.o : @iotk_unit_list_module@
>> > WARNING: modules not found in directories:
>> >         ../include
>> > IDE/makemake.sh numrec
>> > ../../IDE/bin/sprep: line 59: unexpected EOF while looking for matching
>> `)'
>> > ../../IDE/bin/sprep: line 639: syntax error: unexpected end of file
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh ptk
>> > ../../IDE/bin/sprep: line 59: unexpected EOF while looking for matching
>> `)'
>> > ../../IDE/bin/sprep: line 639: syntax error: unexpected end of file
>> > /home/liuhr/QE/sax-1.0.1
>> > test.o : @ptk_module@
>> > WARNING: modules not found in directories:
>> >         ../include
>> > IDE/makemake.sh lapack
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh ffti
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh lasi
>> > /home/liuhr/QE/sax-1.0.1
>> > IDE/makemake.sh sax
>> > ../../IDE/bin/sprep: line 59: unexpected EOF while looking for matching
>> `)'
>> > ../../IDE/bin/sprep: line 639: syntax error: unexpected end of file
>> > /home/liuhr/QE/sax-1.0.1
>> > bse.o : @iotk_module@
>> > bse.o : @ptk_module@
>> > bse_options_module.o : @iotk_module@
>> > bse_options_module.o : @ptk_module@
>> > extract_wfc.o : @iotk_module@
>> > gw.o : @iotk_module@
>> > gw.o : @ptk_module@
>> > gw_options_module.o : @iotk_module@
>> > gw_options_module.o : @ptk_module@
>> > mem_options_module.o : @iotk_module@
>> > mem_options_module.o : @ptk_module@
>> > memory.o : @iotk_module@
>> > memory.o : @ptk_module@
>> > num_la_parall_module.o : @ptk_module@
>> > num_module.o : @num_interpolation_module@
>> > num_special_module.o : @num_interpolation_module@
>> > num_special_module.o : @numrec_module@
>> > pptools.o : @iotk_module@
>> > pptools.o : @ptk_module@
>> > pptools_options_module.o : @iotk_module@
>> > pptools_options_module.o : @ptk_module@
>> > pw_QP_module.o : @iotk_module@
>> > pw_QP_module.o : @ptk_module@
>> > pw_QP_states_extern.o : @ptk_module@
>> > pw_QP_states_interf.o : @ptk_module@
>> > pw_QP_states_type.o : @ptk_module@
>> > pw_atoms_module.o : @iotk_module@
>> > pw_atoms_module.o : @ptk_module@
>> > pw_basis_external.o : @iotk_module@
>> > pw_basis_external.o : @ptk_module@
>> > pw_basis_module.o : @iotk_module@
>> > pw_basis_module.o : @numrec_module@
>> > pw_basis_module.o : @ptk_module@
>> > pw_bse_extern.o : @iotk_module@
>> > pw_bse_extern.o : @ptk_module@
>> > pw_bse_interf.o : @ptk_module@
>> > pw_common_module.o : @ptk_module@
>> > pw_density_module.o : @iotk_module@
>> > pw_dipole_module.o : @iotk_module@
>> > pw_epsilon_macro_extern.o : @iotk_module@
>> > pw_epsilon_macro_extern.o : @ptk_module@
>> > pw_epsilon_macro_interf.o : @iotk_module@
>> > pw_epsilon_macro_interf.o : @ptk_module@
>> > pw_epsilon_macro_type.o : @ptk_module@
>> > pw_hartree_module.o : @iotk_module@
>> > pw_kmesh_module.o : @iotk_module@
>> > pw_kmesh_module.o : @ptk_module@
>> > pw_parall_matrix_extern.o : @iotk_module@
>> > pw_parall_matrix_extern.o : @ptk_module@
>> > pw_parall_matrix_interf.o : @ptk_module@
>> > pw_parall_matrix_type.o : @ptk_module@
>> > pw_polar_extern.o : @iotk_module@
>> > pw_polar_extern.o : @ptk_module@
>> > pw_polar_interf.o : @ptk_module@
>> > pw_polar_type.o : @ptk_module@
>> > pw_pp_parameters_extern.o : @iotk_module@
>> > pw_pp_parameters_extern.o : @ptk_module@
>> > pw_pp_parameters_interf.o : @ptk_module@
>> > pw_pp_parameters_type.o : @ptk_module@
>> > pw_pptools_extern.o : @iotk_module@
>> > pw_pptools_extern.o : @ptk_module@
>> > pw_pptools_interf.o : @iotk_module@
>> > pw_pptools_interf.o : @ptk_module@
>> > pw_pseudo_module.o : @iotk_module@
>> > pw_pseudo_module.o : @ptk_module@
>> > pw_sigma_extern.o : @iotk_module@
>> > pw_sigma_extern.o : @ptk_module@
>> > pw_sigma_extern.o : @ptk_mpi_module@
>> > pw_sigma_interf.o : @iotk_module@
>> > pw_sigma_interf.o : @ptk_module@
>> > pw_sigma_interf.o : @ptk_mpi_module@
>> > pw_states_extern.o : @iotk_module@
>> > pw_states_extern.o : @numrec_module@
>> > pw_states_extern.o : @ptk_module@
>> > pw_states_interf.o : @ptk_module@
>> > pw_states_type.o : @ptk_module@
>> > pw_struct_module.o : @iotk_module@
>> > pw_struct_module.o : @ptk_module@
>> > pw_symm_module.o : @ptk_module@
>> > pw_symmlist_module.o : @ptk_module@
>> > pw_w_extern.o : @iotk_module@
>> > pw_w_extern.o : @ptk_module@
>> > pw_w_interf.o : @ptk_module@
>> > pw_w_type.o : @ptk_module@
>> > pw_wfc6d_module.o : @iotk_module@
>> > pw_wfc6d_module.o : @ptk_module@
>> > pw_wfc_module.o : @iotk_module@
>> > pw_wfc_module.o : @ptk_module@
>> > pw_wfcb_module.o : @iotk_module@
>> > sax_to_want_module.o : @iotk_module@
>> > spectra.o : @iotk_module@
>> > spectra.o : @ptk_module@
>> > spectra_options_module.o : @iotk_module@
>> > spectra_options_module.o : @ptk_module@
>> > tools_error.o : @ptk_module@
>> > tools_log_module.o : @iotk_module@
>> > tools_log_module.o : @ptk_module@
>> > tools_mallinfo_module.o : @ptk_module@
>> > WARNING: modules not found in directories:
>> >         ../include ../../blas/src ../../blas/include ../../fftw/src
>> > ../../fftw/include ../../iotk/src ../../iotk/include ../../numrec/src
>> > ../../numrec/include ../../ptk/src ../../ptk/include ../../lapack/src
>> > ../../lapack/include ../../ffti/src ../../ffti/include ../../lasi/src
>> > ../../lasi/include
>> > make[1]: Leaving directory `/home/liuhr/QE/sax-1.0.1'
>> >
>> > 2. After this, I enter ./sax/src, and then "make all', but finally there
>> is
>> > an error:
>> >
>> > make[2]: Leaving directory `/home/liuhr/QE/sax-1.0.1/lasi/src'
>> > make[1]: *** No rule to make target `@iotk_module@', needed by
>> > `bse_options_module.o'.  Stop.
>> > make[1]: Leaving directory `/home/liuhr/QE/sax-1.0.1/sax/src'
>> > make: *** [all] Error 2
>> >
>> > Any ideas?
>> >
>> > Thanks a lot.
>> >
>> > Shuangping Liu
>> > --
>> > Shuangping Liu
>> > Department of Physics, Fudan University
>> > 220# Handan Rd., Shanghai, 200433, China
>> > Tel: 86 13621865544
>> > E-mail: liusp0301 at gmail.com
>> > MSN: liusp0301 at msn.com
>> > _______________________________________________
>> > Sax-project-users mailing list
>> > Sax-project-users at qe-forge.org
>> > http://qe-forge.org/mailman/listinfo/sax-project-users
>> >
>>
>
>
>
> --
> Shuangping Liu
> Department of Physics, Fudan University
> 220# Handan Rd., Shanghai, 200433, China
> Tel: 86 13621865544
> E-mail: liusp0301 at gmail.com
> MSN: liusp0301 at msn.com
> _______________________________________________
> Sax-project-users mailing list
> Sax-project-users at qe-forge.org
> http://qe-forge.org/mailman/listinfo/sax-project-users
>